Technically you can turn the sub up to 100% without harming it As you mentioned though, if you have it at 100% and YPAO would be putting a large cut in the level, then you would have wanted to back it off a bit. It actually sounds like you have it dialed in fairly well already, so is there an issue? I have no problem with sealed subs

However if the problem is you're looking for more bass, you may want to move to a ported for more low end grunt or simply a larger sealed sub (or get another F12).