Are you sure that you don't have some Eq turned on in the Marantz? I would bet some part of Audyssey is turned. That darn system has a habit of introducing itself without invitation.
You have to make sure that Audyssey is turned off input, by input, and when you have checked that make sure that the set up lock is left on. I can tell you that unless you are very carful Audyssey will inflict itself on you without invitation. Nothing good comes out of Audyssey as far as Eq is concerned. It is useful for levelling and distance settings, apart from that, it is a menace.