In that case it is very likely that the mic/or that very long wire is the problem. Using a Yamaha mic of course would not get you very far because of the potentially very different calibration and/or even the level output. Can you ask your local dealer nicely to convince them to lend you an Audyssey mic? Any recent Denon or Marantz's for the 4000, 6000, 7000 models should work. If it works then you know for sure it is the mic and then you can order a replacement, it should be free if your unit was purchased from an authorized dealer.
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Ok so when you messaged me I was trying the audyssey mic again and no dice on that. I then tried the Yamaha one again and I measured 3 positions with it and sub level matching screen worked. After that I did Yamaha one again and measured 6 positions, except initially it skipped the sub level matching screen so I went back and it worked. My distances were correct, sub levels were good but speaker levels were in the positives which is not right. Also it wouldn’t let me change my fl/fr crossover to 80, it was grayed out as full band, I could change the rest. I switched speaker selection to all for 80hz. I realize the Yamaha mic is going to be different. It definitely seems like the mic. Should I even be listening to anything on here since I used Yamaha mic