The 1/12 smoothing makes it easier to interpret the activity. Not smoothing it, if it works for you is fine, but I know I've seen some acoustics guys ask for charts at 1/12 smoothing.
Some boosting is fine, and may be required... my understanding is that you don't want to rely on that because it is effectively eating the digital headroom of your amps, which in turn can lead to clipped signals sooner than would otherwise be the case. (Corrections welcome if I am missing something there.)
With the Audysseu you have, you might run into other issues across the board. I would always recommend experimenting. Try it with audyssey by itself. Listen to the full system. Make certain you are happy with the sound. (Some complain of the way Aud corrects up high.)
Anyway, you've got the tools and seem like you are on the right path.
Keep in mind that the sexiest curves aren't always the best sounding, too!