Lol. I think you might be just a little backwards. Nulls are the dips. Peaks are...peaks!
Basically you have it right. Try to flatten the peaks. If you have a null(dip) in the crossover region add a few feet, one at a time to the sub distance in the AVR. +/-5db is pretty ok. I sweep at about 90db usually. That should be fine.
Also. Remember to watch the “q” of your filter. That’s how wide it is. If you only need a narrow range pulled down, use a narrow q. Conversely, I wider Q will address a wider range of frequencies.