The reason is because at 45hz there’s a room mode there. That means even though the subwoofer is outputting 45hz, the room is cancelling 45hz at the LP. Nulls can’t be boosted by eq since it’s a function of the room. So if you boost 45hz by 10, everything else around it will go up too since it’s not a notch filter acting only on one frequency. Imagine a “V” shape. The problem is, 45hz won’t go up unless you move the subwoofer, or the LP and the reason built in sub eq’s only allow for about 3db boost is because you can blow up your stuff by over boosting frequencies that won’t change. You can pull peaks down however, and I would focus on that.
Also, could you set you right side graph limit to 200hz? That will show the graph more like how you’d hear it.