Sound becomes more localizable as the frequency goes up. This is why THX standardized 80 Hz for the crossover frequency. Higher than 80 Hz bass starts to get localizable. The thing is, the THX crossover is not a brick wall filter. I don't know what your AVR is doing, but THX specifies a 24 dB/ octave slope, which means there will still be some output above 80 Hz. Anyway, the lower the crossover frequency, the less localizable the bass will be.
So if one of your subs is drawing attention to its position, one thing you can do it lower the crossover frequency on that particular sub. You can do this by flipping the 'crossover' switch to 'in' and lowing the frequency on the 'crossover frequency' knob until the sub isn't localizable. Maybe try 70 Hz, then 60 Hz.
Hsu can help you with the positioning, but they can't know all the particulars of the geometry of your room, so while their placement advice is usually pretty good, you might be able to get a better sound by experimenting with placement on your own as well. Try a bunch of different placements and have fun with it. One thing to try, just for fun, move the subs right behind your listening position. I love near-field bass! Near-field bass tends to be localizable, but one thing you can do to negate that is place the sub so that it is equidistant from your ears, i.e., so one sub isn't much closer to one side of you than the other. Make sure the subs have the same phase setting too. If you want to try an interesting science experiment, move both subs behind you in a symmetrical placement versus your listening position, and flip the phase switch on one of the subs and listen to what happens.