That's what actually happened the first time when I ran Auddisey, before getting the center. By mistake one of the towers had flipped wires. Auddisey said that one of the towers was out of phase. The out of phase tower turned out to be the one with the correct wiring. When I fixed the tower that had the flipped wiring, Auddisey told me both towers were out of phase.
I flipped both tower wires. My sensation is the bass is better than when the wires were set correctly, a bit.
The question is, do I need to run Auddisey again, after I flipped the wires?