Yes, but and I could be mistaken, that's for when you are inputting and outputting through the same device. Currently, you've calibrated the soundcard, but have not calibrated the Xenyx. Now this may or may not be an issue depending on where the Xenyx starts to roll off.
I believe, and again I could be mistaken, that you should have gone from the output on your soundcard to an input on your Xenyx since that would be your actual signal chain that you want equalized flat. Again, may or may not make a difference depending on the the Xenyx and to what frequencies you want accuracy to. IME, pro style equipment tends to roll off around 10hz and that's what the documentation is saying. You're probably fine, just wanted to through that out there.