Holy crap man so sorry to hear that!!! That's freakin rediculous!! Man I would be fuming too!!
Well I'm not too familiar with the new MCACC (only experience with older version) but my guess would be to call up Pioneer & raise hell until they fix it & pay all shipping!!!
As far as using it without running MCACC, yes you can get just as good of performance normally without needing the auto calibration. That is IF it allows you access to the EQ to manually adjust (if there is one). Most auto EQ systems are made for the average joe who just wants to do a one button fix. If you have a REAL SPL meter (like RadioShack or others, NOT an app) then you can get everything dialed in great! You would need a test signal disc such as the one free from RealTraps.com & the SPL meter. Look into whether there is some sort of parametric EQ that you could adjust like I mentioned. My RX-A2000 has one & that's how I calibrated my system so I'm hoping the Pioneer is set up similar.
I'd try to call Pioneer to get what you need but in the meantime try to dial in the 35 I case they are hardheaded. In the end it comes down to what they will do for you, IF you can dial in the SC35 manually & if it's worth getting your money back (-$150 spent)