When you cut any part of a track make sure you do so at zero crossings. If you paste two waveforms together where either was cut at a non-zero crossing you will sometimes get a little discontinuity that will be audible.
Ctrl-Shift-d and then hit the button Snap Zero.
I don't know if it would matter to you but I also ensure that any file I am working with falls on CD block boundaries (588 samples=1/75 second=75 frames per second). This is so that if I ever burn a CD with those files the burning program won't add silence to pad it to a multiple of the CD block boundary.
The default frames per second (Status tab of the options dialog) is 15. You can change it to 75 but it is really hard to add a single frame or two of silence. I just leave it at 15 and ensure the total number of frames ends in .000, .200, .400, .600, or .800 which makes the number a multiple of 75 frames per second.