I just played the Dolby Atmos Demo Disc 2014 on my system (Yamaha CX-A5100). The sound for these 4 trailers (Amaze, Leaf, Conductor, Unfold) in Dolby Atmos is the best sound I have ever heard, period.
It's weird that the Atmos volume is lower than the regular DD volume in your system. If anything, I think Atmos should be louder with the extra
4 ceiling speakers.
BTW, I set the XO to 120Hz for all my speakers. My ceiling speaker spec is 45Hz - 20kHz +/- 3dB, 88dB/2.83V/m.