I don't have the turbo so I have one port plugged and max extension.  I have Crossover set to out.  I use the Yamaha RXV2600 subwoofer Pre Out to the sub.  My L,R Vandersteen 2ci are large.
The YPAO sets it up as follows.  Crossover 200Hz,  Size: L,R large, BL,BR large,  Bass Out: to both SWFR and L,R,  Levels: L,R +9dB, C +6.5, SL,SR +5, BL,BR +4,  HSU sub -9dB
So I like Greg's suggestion of boosting the sub level 4dB and I could set the crossover down to 100Hz.  The quality of the sub seems pretty amazing.  A 16Hz organ on their test CD sounds perfect.  I probably just need that extra 4dB on the HT rumble.  If you notice anything I'm doing wrong please let me know.
This forum always gives excellent advice.  Thanks.