Hi!
So for starters, the 3600 has separate dual sub outs. Audyssey will measure each separately, set the distance for each and eq them both as one sub.
For stereo subs. Well it’s not really a thing. Almost ALL bass is recorded mono so even if you could set up a system as you’ve asked, you’d notice no difference. Tom noussaine did a really nice deep dive into the stereo sub thing a few years ago. It was very enlightening, and unfortunately I can’t find any of his work online anymore. Seems it was all purchased, or part of an estate thing I guess. Idk. In any case, I would let go of the idea.