Nomo, I do think there are concerns that need to be addressed with pro amps, but not for the reason of vertical ventilation. Receivers cool off at the top, but pro amps cool off forward/backward, as they are designed to be stacked on top of each other. In fact, I think you are SUPPOSED to stack them for best cooling, as giving them space vertically does weird things to the circulation/venting. MidnightSensi posted some really interesting cooling diagrams with different stacking scenarios, it might have been from Middle Atlantic, but I'm not sure.
cutter, I would see if you can find out if your Yammy has adequate preout voltage to get the full benefit of the pro amp. I would say that most receivers out there have plenty, including just about every Onkyo and Denon I have read about, I'm just not sure about Yammy. However, even if the preout voltage wasn't quite adequate, you are probably still fine.
I like how the Yammy looks, but if you could possibly find out how bright the LEDs are I would advise doing so. My Crown XTi2000 has a display that is just insanely wicked bright, as is the power light. I had to cover both with black electrical tape, as even window tint was not even close to being helpful enough.
Pro amps don't have triggers, but you can buy an aftermarket one or something if you wanted.
Pro amps sometimes have loud fans, but I've never ever once heard mine go off.
Otherwise, pro amps are a great value, and I've read good things about that Yammy line, I say you go for it. The one plug I'll put in for the XTi line is the free BandManager software, very cool and flexible, can load up to 20 presets (inputs, notch filters, varying Q, shelf filters, distance/phase, and more) that can all be accessed from the front panel. But again, the display is somethin' fierce with brightness.