Well, the only ramifications of you hooking it up the wrong way would be a 180 degree phase change. Nothing more.
To check it, I suggest you grab a cheap continuity tester with wire leads and a long piece of wire. Doesn't matter if it's thick, thin, whatever. Just wire. Twist one end of the long wire to the positive or negative end in the equipment area (or just deicde what's going to be pos/neg). Then connect the other end of the long wire to one of the wires on the continuity tester. Then touch the other continuity tester lead to one of the wires coming out of the wall. If you get a tone, then you found the wire you were looking for. If you didn't, then it's the other one!
By the way, it always helps to work with the right wire (as in when testing the front left run, actually make sure you're connected to the front left near the equipment). Sounds obvious, but I know that I've done dumber things.