Sorry. We forget sometimes lol.
XO=crossover.
You can try the phase setting in the app, but I can’t recall if it’s infinitely adjustable or just 180°. If it’s just 180 then you might find it causes an issue somewhere else in the frequency response(FR). The distance tweak(adding distance to the sub in the AVR)as its sometimes called may also cause issues too, but the adjustments are more granular, and you still have to measure so you know what’s happening.
As for EQ, you can try, but I wouldn’t boost more than 6db, and I’d ONLY do it as a test to see if it changes anything. I don’t think it will, but it’s good to have as much information as you can. The distance tweak is easy to try and can be very effective. Basically telling the AVR that the sub is farther away, will make it fire sooner. Like milliseconds sooner. But if you get right, it can help with integration of the mains, and help “tighten”(yuk) up bass.