Check your receiver setup.
The test tones operate independent of any source. The fact that the test tones behave like they should proves the speakers are wired fine.
Maybe someone else can offer some advice on what to look for in the Sony but it sure sounds like it's treating the processing as dolby pro logic, not discrete digital chanels like DD or DTS.
Perhaps the DVD is outputing PCM which, I believe, the DVD alayer converts to stereo. Is there a "bitstream" setting option?
Again, I'm just guessing and won't take offense if someone else cures it.