This has been a really good discussion. It would be easy just to buy the top of the line remote from Pronto or URC, but there's no way I'm going to spend $750+ for a remote. My system just isn't complicated enought to warrant that. I just want to be able to turn my stuff on. I guess part of the problem is, I want a remote that does what I want it to, but I also want it to look halfway decent. Most of the URC stuff just doesn't look modern. I held one in my hand and it just feels old and clunky.
I think the one part that Harmony has right is that they now how to make things look good and have pretty easy computer based setup. I've done a bit more research and agree that the RF1000 may not be the best choice, but it'd probably be just fine for my situation because I really don't fiddle with things much. I have everything set the way I want and don't really change a lot. I just need to be able to turn things on, switch an input or two, and be able to turn things off. But at the same time, there does seem to be a lot of issues with the 1000.
I really like the higher end Pronto and URC stuff, but it's way overkill for what I need and the lower models just don't appeal to me. I like the Harmony remotes, but most here think they're junk for whatever reason. I'm kinda stuck at this point.
What about the Harmony 890? It's an RF remote, it's got hard button and touchscreen and it's about $350.