Welcome to the forum!
Check out the digital audio input selection in your owner's manual (pages 43 and 44 if it's the same one as the one online at Onkyo). On page 43, it states:
When an HDMI IN is assigned to an input selector as
explained here, the digital audio input for that input
selector is automatically set to the same HDMI IN.
See “Digital Input Setup” on page 44.
I read that as meaning that the HDMI input overrode your previous assignment of (I'm guessing) the optical digital input for the "DVD" input that you were using for the 360. I'd recommend going in and resetting that.
If you would, let us know if that does it. Thanks!