I recently sold my Logitech Z-5500 system
Good move
to upgrade to an actual home theater system with maybe double the power perhaps,
Let's begin, by dropping the concept of "power" for now. It's possible to have a 50w high efficiency system, that gets louder, cleaner than a 300w system low efficiency system.
With that said, I understand now that your goal is to get louder than what the wimpy logitechs can do, and we'll help you out, with superior fidelity.
but am trying to stay around $1,000.
$1000 is not a friendly budget to start with, if you want
surround sound. I strongly recommend going with two speakers for now, plus a receiver. Surrounds and subs(and you will want two or three
quality subs) will get really pricey.
I have been eyeballing the Samsung HT-D67W30
Don't bother
and a few Denon and Onkyo systems like the HT-S9400THX, and am a little confused as to what direction I wanna go. I know I want a quality system with a thunderous roar!
What you want, then, is not these wimpy home theater in a box setups!!
Also, I would really like a system that I can configure with the remote, so that I am not tied to a certain input on my TV trying to adjust the sound for another input on my TV that doesn't have the configuration screen on it. I hope I explained this well enough, lol.
I officially have no idea what you just said.
Anyways here is what I recommend
2X KEF Q700 = $900
+
1x Marantz SR6001 = $280
Total = $1180 (+shipping)
It's not ::quite:: under $1000 but this should outperform, like tenfold, the tiny little things you're looking at, in output, sound quality, and depth of bass. You really need to pay for performance, and make some sacrifices IE surrounds/sub. A 2.0 with the above parts, will really impress you.
If you don't mind spending a bit more, you can get the more recent SR6004 or even more recent SR6005 receivers, from the same website

but the older SR6001 should work very well as long as your source outputs Linear PCM (like a Playstation3). It's still a 7.1 receiver so you can add more channels slowly whenever you feel like it, and true badass subwoofers like two or three
Rythmik FV15s instead of brutal 6.5" drivers expected to reproduce movie LFE content
Heck, I wouldn't be surprised if a good stereo, gives more immersion too. And when you do feel like adding surroundsm it won't be a sacrifice of anything else.
More importantly, the amps in the marantz, are probably a ::LOT:: better than what you'll get out of the Onkyo amps. It's a receiver that retailed for around $1200.