As far as I know the sound quality should be the same either way. The main difference is using the analog outputs the player will have to perform the bass management, speaker delays, etc.
I think the excitement you are hearing concerning the analog outputs is it allows people with an older receiver that does not do audio over HDMI to enjoy the new HD audio. That is my case, I have a Toshiba A35 with the analog outputs to feed my Rotel RSX 1057 receiver (need to update sig.) that has analog inputs but does not do audio over HDMI.