Wow! PENG is spending a lot of time to make sure you're good, John. You should listen to him. So I'm gonna back out of the way. But first, just 2 items...
1. You have one cable going from your Z9 to your sub. So yes, that cable must carry everything sent to the sub. That means the LFE channel or signal,
and all other bass signals. Read the manual and PENG's excerpts carefully. The manual always refers to the LFE
signal, or the LFE
channel. Making an adjustment to the LFE should not effect the other "normal" bass set w/ your crossover.
2. Your Z9 does give you a way to adjust that other bass, kind of like an equalizer. I found this on page 72 of your manual:
View attachment 17032
Just remember, if you turn up the volume with the control on back of your sub, you are turning up everything on that sub.
On your AVR, there are ways to turn up only the LFE,
OR all bass under your crossover,
OR frequency bands within your bass,
OR everything. Just pick the one you want. I still say that turning up/down ONLY THE LFE should not affect your music.