After moving both subs around and playing with phase, I determined that the best sub locations are as shown
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Notice that both subs are now oriented with the drivers facing one another. The Energy sub was placed in the corner. Here is the in room sub responses.
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At this point I ran Yamaha's YPAO room correction facility to integrate the remaining speakers with the sub into the room. YPAO put the virtual sub at 12.5 feet from the mic. I then ran a full frequency to see how it looked
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There's a nasty notch happening between 65 and 150 Hz. I fixed this by playiing with the distance that YPAO had set and I found by trial and measurment that the best integrated response occured with the sub distance set to 8.5 feet as shown below
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The room is an acoustic mess with bare walls, bare concrete floor, and duct work. The only thing sort of helping is that its an open ceiling. Its a bit too much for the earlier versions of YPAO to handle effectively. I set the EQ on YPAO to try and give a flat response.
Just to make it easier, I'll post full frequency response before and after today's work. There is no minidsp used here.
Before:
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After
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I bumped up the volume of the subs on the AVR side soit effects both subs equally to try and get a Harmon curve.. The red trace is where PEQ has been set to flat, speakers to small, bass sent to subs only,crossover at 90Hz, sub distance is 8.5 feet. The green trace is with PEQ turned off, mains set to large, bass sent to both sub and mains, crossover at 90 HZ, and isub distance set 14.5 feet.
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