Glad that we could help!
Those two speakers with the headphone jacks could be used the way that you want. I will caution you that your receiver can put more power into those than their original amp, so just be aware of that. As rear speakers, you likely won't run into any problems with overpowering them, but if you hear them sounding strange, then turn the volume down.
Also, you are correct about the center channel setting on your receiver - that would be a phantom setting. As long as you have it set up in a surround sound mode, it would just send the center channel information to the two front speakers.