Hawke summed it up best and that is exactly my experience with Time Warner. The channels below 100 are analog signals, the middle tier is a mix and depends on the particular network and show being broadcast at the time, and all of the movie channels and music channels are digital (mostly DD 2.0, but movies are often DD 5.1).
I have the Scientific Atlanta box as well. I have to use both analog and digital connections. The receiver (Onkyo) auto-detects the signal and favors the digital output if both are present. If you receiver does not auto-detect then you will have to go in and change the output to digital (what receiver is it?). You should also verify that the coax digital input is assigned to the receiver input you use to view from the cable box; ie if you connect the set top box to the 'video1' input, then you must assign the coax digital in to video1 in. If the receiver doesn't allow you to assign the digital ins to any input selector, then it is likely hard-wired to a specific input - like dvd - and you will have to connect the set top box to that input.