Lets get few things straight:
Yammi 690 doesn't support real 5.1, only stereo to 5.1 as dolby pro-logic, which is sub-par and not really comparable to real 5.1.
Now some Pro-logic receivers had multi-channel inputs, which made them future-proof - in-fact I used to have one like it, but 690 doesn't have them
Regarding speakers, since you are missing center anyways, my rec is just connect fronts and sub for 2.1 setup at-least for now, until your budget situation improves.
You sub is passive - so you need to connect your main L/R to sub and connect L/R sats straight to sub.
If your sub has crossover control, set the dial in high position say 120-150Hz
Good luck