There's not much out there about my particular subwoofer...But this is some info about one athena's other subs and how their "SCT" control works. I have basically the same technology in my sub:
The AS-P4000 features athena’s exclusive SCT control. This is the all important frequency adjustment, and ours is the easiest in the industry. athena has thoughtfully marked the frequency control with all of the model numbers for our speakers. Simply match the control to the model number of speaker you have in the front channels, and you have successfully set up the subwoofer.
So basically, I think my sub knows what speakers I have (S.5 L/R and Surr channels, C.5 centre channel) and precisely calibrates the cross over frequency to match them.
I found out that the S.5's have a frequency range of 80Hz to 20KHz, so i've set the crossover for the speakers to 80Hz.
Here's a link to the S.5 system:
http://www.athenaspeakers.com/v2/classic.php?ident=S.5&sub=manuals
If you click on the pdf file for recommended settings, it says to adjust the receiver so that the speakers are set to "Large"
Originally, I also had the sub setting to L/R + LFE which I think means that the low frequencies originally dedicated to the front speakers were being channeled to the sub. It may be better for me to set the sub setting to just LFE so the front speakers still process some low end frequencies. Since 1) Athena says to treat the speakers as large and 2) they're not really really small speakers, as they are capable of some low end frequencies (again, range is b/w 80Hz and 20KHz according to Athena).
What do you think?