Another possibility is the OP's system may be underpowered, I didn't see any mention of what was being used to drive those speakers. Maybe the fronts are using up all the power. Something to consider.
It's also my understanding that speakers that have the +/- wires correct can still be out of phase due to room/setup variations. A test disc, or the audio setup portion on most THX dvd's, will offer a phasing test to help determine that.
Jack