Yes, you might want to clarify that your gain match is either with the same SPL with both subs in the exact same spot so you eliminate the room or measured 6in away from driver to try and do the same.
Sorry Meant to add more info..
In my system I found this to work best..
I use subs in their best positions as compared to measuring subs in same spot for gain.. I want room to influence bass when doing spl. As when all done, they will be in different positions from each other anyway..
1- Find best locations for each sub.. And put each sub in those locations..
2 - each sub seperate, use a SPL meter at MLP and set levels to 72db for each sub seperate.
3- now run REW.. Measure each sub seperate, then together.
4- look at combined to see if you get a total max positive summ.
5- If you adjust closest sub phase (or distance) to align with other sub to get max spl summ. Try for fun inverting one subs phase from 0 to 180. and see if things get way worse or better.
Sometimes, the subs will be out of phase from the start, and you won't get a great max spl summ.
hope this helps a little.. I'm no expert by any means, but this seems to work great at my system.