My only thought, and perhaps another friend can clarify, is that to calibrate the AVR, use its own pink noise as that will be a "known quantity" to the AVR in terms of how loud it plays at X volume on the dial. If the disc is mixed high, or there is a larger than expected gain somwhere between CD and AVR, you won't actually be calibrating the AVR to anything but that particular disc.
(My Blu-Ray, and three different modes of streaming, for example, all put out different signals to my AVR. Tidal tends to be the "loudest" in terms of the signal leaving my computer and entering my AVR via Ethernet.)