Could be, but if the issue is that then I'm worried you'd end up killing the fibre optic adapter (which isn't cheap).
@PENG and
@TLS Guy know more about this stuff than I do. I looked, but haven't been able to find a voltage/amperage spec for HDMI.
The other thing to try is remove HDMI from the equation and use component/optical out of your STB if it has those ports. I still wonder if that would transmit the electrical signal through component.
DO you have any sort of surge protector or UPS hooked up to your system? Most of the APC UPS out there will cut AC power if the voltage gets out of whack. That may help with this, but if it is truly lightning that is causing the issue then grounding is your only option.
There are a lot of variables to check in this situation since we still aren't 100% on the cause.