The DVD multichannel inputs on your 604 seem to be meant for line level analog audio inputs directly from a DVD or Bluray player with an internal DAC and similar multichannel outputs. I don't know whether this can work with preamp level signals, although I think it might. Line level signals are typically in the 100-200 mV range, and preamp level signals are somewhat stronger, in the 0.5 to 1 Volt range, if I remember correctly.
How are you planning to hook this up? Will the signals go directly from your disc player to the Onkyo? Or will they go from the disc player, through your preamp/processor, and then to the Onkyo? How you do this will determine which volume knob (preamp/processor or Onkyo) controls those channels.
You'll have to experiment with the volume controls to see what works. Start at very low volume and increase slowly.
Onkyo TX-SR604 Manual
http://www.intl.onkyo.com/downloads/manuals/pdf/tx-sr674_604_manual_e.pdf