Right now they are all wired together inside the box so they are just three speakers. My ultimate goal is to turn them into a three way set of speakers.
So you have 2 speakers... both are un-messed-with... still complete with everything installed and wired just like they were new? If that's the case, see if you can find a make and model number on the back and let us know.
Most home audio/theater speakers have 2 or more drivers. The "driver" is the cone shaped thing that moves in and out to produce the sound. It is what most pedestrians call the "speaker". (Note: There are modern drivers that are not like the old cone-shaped ones.)
Most speakers w/ 2 drivers (2-way), or 3 drivers (3-way), have a crossover already installed and wired inside the speaker cabinet. A 2 or 3-way speaker has 2 or 3 drivers because it is very difficult to make 1 driver that can produce both low and high frequencies. So the range of frequencies is split into 2 or 3 parts by the crossover, and each range is sent to the appropriate driver. Great design of the crossover circuit is not simple, and is about half sorcery. An amateur can design/build a crossover, but maybe not a great one.
One more comment. Assuming a good source, great sound is mostly a function of good speakers. An equalizer that lets you boost specific frequencies will undoubtedly alter the sound from the original. If you're after accurate sound, your better bet is better speakers.