1) I don't have links to direct data, but you could find links for speaker measurements with and without grills - AT screen should have similar (aka very small) effect on sq, which you could counteract by small boost in treble if so desired
2) Rear ported speakers might be a challenge if too close to back wall, if you could have at least 1ft space behind them you should be ok. Alternatively you could just go with front ported or sealed speakers.
3) this is not just a concern a for center, your mains and surrounds tweeter height in relation to ear level should be coordinated as well - aka try to get ear and front twitter on about same height, while for surrounds tweeter should be about one foot above ear level.
Is this critical - not, but it would not be ideal
Whats your budget for speakers and AVR ?