When the subwoofers are on the same plane and also the same distance to the listening position, there is no need to individually phase them with respect to each other. The subwoofer distance control is the preferred method to time-align the subwoofers with the speaker channels.
The distance control is preferable to the phase control because it digitally delays the signal uniformly across the entire pass band of the speaker or subwoofer. The subwoofer phase control (in comparison) has the most effect at a single frequency (usually 80 Hz), and progressively less effect at deeper frequencies.
I only recommend using the phase control when there are dual subs being fed by a single AVR output, and one of the subs is closer to the listening position than the other. In that case, the phase control can be used on the closer subwoofer to delay the signal on the closer subwoofer such that it better time-aligns/phases with the farther subwoofer. Then the single subwoofer distance in the AVR will be more valid for both subs.