Well the sub problem turned out to a simple one. I was really scratching my head, check the resitance on both VC's they were good, hooked them up one at a time and the sub was "working" but limited output, checked the voltage at the amp which was good. I was about to give up and then I noticed that one of the RCA's was loose on the amp, plugged it back in and shazam it worked. I put on something with good bass, and turned it up and tried it unpluged and then pluged in and that was the problem. Now though, the front speaker is shot though. Somehow water is getting in the door so I will have to take it in to have that looked at. I am not sure if it was the water was the problem or if something actually happened to it, either way it needs to be replaced.
Sean