Tomorrow, that last paragraph of yours is bang on what I was trying to say, but didn't quite get out. Each of those four spots are within a foot or so of each other in terms of distance from them to the microphone, so I didn't think those distances would explain the difference of 4 dB. I was thinking more along the lines of room modes, standing waves, etc. happening differently with each new spot. That's why I wondered if it might help to provide a smoother bass response.
Here's the funny thing about my experience with YPAO. When my mains were back in their original position (22 degrees), I had varying results with YPAO: sometimes it would tell me the centre speaker was large when it wasn't; I'd get difference dB for speakers from one YPAO to another; it was all nuts.
But the other day when I moved the mains to their new position of 25 degrees, YPAO matches up every time. And I've run six or seven of them since moving the mains. It says the centre should be small, and I get identical dB readings for all the speakers each time I run it. It still says my crossover should be 120 Hz, of course, THAT hasn't changed! So strangely enough, Seth, I'm not too down on YPAO anymore!
cheers,
supervij