The Yamaha HTR line, if I am correct, uses DACs and internal parts that are slightly less attuned to supporting multiple 4-ohm speakers. However, as I believe was stated in Audioholics' RX-2500 review, it was recommended that the user leave the receiver impedence setting at 8-ohms regardless of the speaker impedences.
Have you turned the volume all the way down since your brother caused this problem? How loud was he driving the speakers? Are you in a large, absorptive space?
Since your receiver will shut off periodically, however, regardless of connectivity, try checking the fuses or call Yamaha.
Check out the reviews on the RX-V line here at Audioholics, and see if they give you any help in regards to these settings.