This is going to be a simple back and forth process for you (unless you have an oscilloscope handy). What you want is accurate gain staging, so that neither unit is distorting on input or output when played at the loudest levels you intend to use. I would set the pre-pro at 50% and bring up the DSP-A1 to as high as 50%. If you can go that high and its not the loudest you'll use, then bring up the pre-pro a bit more until it is to 60-70% - then notch up the Yamaha...
You simply don't want either one maxxed out and you want a good balance of input to output. In other words, you don't want to amplify noise, so you want a good solid input signal to the DSP-A1, however you don't want to overdrive the pre-pro so as to feed distortion to the amp either.
In NO case do you want to hear distortion - if you hear that - back off on both and start again.