what about crawling around with a spl metr and a sweep playing and look for the flattest response?
this would seem to me like a better idea because you might have, say, a massive node at 30hz and the music you chose to listen to didnt have anything at this particular frequency.
also, if you havent got the subs volume level set relitive to the mains and the subs volume is relatively low, you may choose a place on the floor with a large peak in the freq response that makes the music sound better just because its sounding louder? then when you set levels later you have too big a peak.
i'm no expert i warn ya, just thinking aloud here(at 6:30 in the morning aswell) cheers
b