As for reading the manual, yes, I did read the manual. However, in my current locations, I had vallies at 40hz and 63hz that I could not get rid of. Howerver, when I moved the sub to the new location, I was able to completely get rid of the valley at 40hz and was able to boost at 63hz to flatten out the signal. The only problem I had when I moved the sub was that my receiver was showing me SWFR Phase of "Reverse".
As for the YPAO not being to accurate, I can agree to that. I did two calibrations within 2 minutes of each other. The first time, my receiver set my crossover to 80hz. The second time, my receiver set my crossover to 90hz. I said to myself, why did it do that when nothing in the room nor did the noise level change. Anyway, I guess the best tool when it boils down to it is your ear.
Thanks everyone for your response. I do appreciate you taking the time to read and respond.