Hi tyreal,
You should definitely manually override the setting for your front center channel, and set it to 'Small' with 80Hz crossover.
For the subwoofer amp, set the volume knob to ~ 9-10 o'clock (just barely above 1/4 of the way up), set crossover switch to 'Out', the On/Off/Auto switch to 'Auto', and the bass extension switch appropriately to whether there is 1 port open or 2 ports open on the back of the sub. Then, start with subwoofer channel level on the receiver at +0db. Moving forward, to get louder or softer bass, simply adjust the subwoofer channel level on the receiver in 1db increments.
Sincerely,