Hi, Moonlight. You're talking about phase, right? That affects the timing of the subs relative to the main speakers. Typically, I'd say try each and decide which sounds better to you, as the "proper" setting dependings on your room and the placement of the subs.
Which receiver (or processor) are you using with these? That might already account for it. My new Pioneer Elite VSX-23 has Phase Control that adjusts the subwoofer signal so that I don't have to worry about it.