shagoofa,
You can get a frequency response measurement by performing an FFT on an impulse response measurement. The size of the FFT will dictate the frequency resolution. Whether or not low frequency peaks/nulls are caused by modes can be determined from comparing the measured frequency response to a predicted frequency response for the loudspeaker and microphone positions you are using to make the measurement. Software available that can reliably predict this for you are
RPG's Room Optimizer and
CARA 2.1.
Alternatively, you can use something like the Linkwitz Labs file bpape linked to as a guide when looking for modal effects in a frequency response measurement.
To do either of the above, I recommend using only one loudspeaker source with various - 4 or more if you can - microphone positions. To get an idea of what each loudspeaker in a multi-channel setup might contribute to the overall response, move the test loudspeaker around to the different locations and make different measurements.
Of course, you should also prepare yourself for the typical end result of lots of measurements: more questions than answers!!!