If you are in an apartment, the 6332s and JTRs don't make a lot of sense. Those speakers were designed for high output, although they ought to sound good at low levels too. Seaton, Funk, and JTR probably wouldn't be a good idea for subs either, those will shake your entire building. Unless you plan to move to a house, I think the JTRs and 6332s would be wasted, they would never get to stretch their legs. This being the case, the R300 and TAD speakers have an excellent reputation, although I don't know much about the Vapor and Selah speakers. The LSR 6328 would certainly not disappoint either. You should ask your local pro-audio shops if they have any to demo.
For subs, in an apartment, what I would recommend is near-field placement, if you can accommodate it. This is where you place the sub very close to the listening position, like an endtable type placement, or right behind your seat. This way you won't need to have the subs blazing nearly as hard for you to get a nice rich bass sound, and your neighbors will appreciate this. Near-field placement also has an extra visceral feel, which you don't get at any other placement unless the sub is a monster. You might be able to avoid using any kind of night listening mode like Audyssey's LFC this way as well. Some subs which would be great for near-field is the Rythmik D15SE, Hsu VTF2 and VTF3, Power Sound Audio XS15 and XV15. You might consider getting two of them and have them flank each side of your seat to lessen localization.
A speaker that you might consider is the
GedLee Nathan. It is in your budget range and will have terrific dynamics. Pricing is
here for the GedLee speakers. A speaker worth considering with dynamics in the JTR range is the
Pi Four. You can upgrade the woofer to the JBL 2226 for an extra $250, supposedly that is one of the best drivers for mid bass being made. Sadly, like the JBL LSR 6332 and JTR, you would not get to really explore that speaker's potential, so it might not be worth it, but I think that speaker would still be amazing.