I don't think speaker break-in would have such an obvious effect. Doubtless there will be some physical changes in speaker performance over time, but a such changes will probably be subtle. I have heard that speaker break-in is thought to be more a case of you getting used to the sound of the loudspeaker, more than the loudspeaker itself actually sounding different.
I don't know much about loudspeakers/electronics, but maybe the electronics in the crossover (resistors, capacitors, or inductors?) have been damaged. You could inspect the crossover for any signs of damage. Be careful with the capacitors.
Other than that, the only thing I can think of would be to send the speakers back to Wharfdale for inspection and repair.