It seems to be completely random...
At first I thought it may have been linked solely to the CD player, so I switched out the monster cable input wires, thinking it was linked to that...then I started noticing it on the radio as well. I haven't noticed it on my DVD player, because my DVD player has been at the repair shop (which, of course, I'm trying to decide now what I need to replace).
The only "common" thread was that on both receivers, it was the same speakers fading in/out...which, now that you say it may be speakers, I did just switch these speakers back to this receiver (when I brought my DVD player in to get checked, I bought my sub too, because I couldn't isolate the humming noise it was producing, after trying just about everything).
Do you think it could be the speakers?