I am new at this please clarify. So I should buy flexible conduit? Any special type and run my two speaker wires in that and then drill a larger hole in my floor joists to run the conduit with speaker wires inside to my receiver?
Flexible conduit is fine, as long as you use the correct type for the cabling inside. Low voltage cabling isn't allowed, by code, to occupy the same conduit or junction box, unless it's in a separate non-conductive/non flammable jacket or the box has a divider inside. If you think you know how many cables you will need, forget that and plan for more. If you want to be relatively safe, add a couple of Cat6 cables to the mix and you should be OK for quite a while, in theory.
The common guide for filling conduit- no more than 60%. Pulling cable around curves causes added resistance and you DO NOT want to pull on cables that are tight. Use some kind of lubricant- could be Windex, could be silicone spray, could be wire lube from an electrical contractor- use it.
List the cables you plan to run- Home Depot sells blue flexible conduit up to 1" but electrical parts suppliers Grainger, etc have orange flexible conduit with 1-1/4", 1-1/2", 1-5/8", 1-3/4" and 2" diameter. The fittings for this can be orange, but it's not absolutely necessary that you stay with that color- the gray parts work just as well and if you find that you need to use a large junction box, these fit the hole knockouts.