I will see if I can follow. *deep breath*
It's possible that damage could have occurred here. Do you bi-wire or bi-amp (I know sometimes people get these two confused). What kind of amplifier/amplifiers are you using?
Pops or clicks? Was this from the receiver, speakers, or the amplifier/amplifiers?
How's your hearing? If a tweeter is blown it's blown, it would have absolutely no output at all. It's possible that the crossover was damaged and that could account of a imbalance between the two speakers. It could also be that you're hearing a problem that's not there because you think there may be a problem.
Could do damage to main output transistors. Depending on the amplifiers if they continue to run without protection kicking in could also do damage to speaker components. It's difficult to say without knowing more.
Okay...
1) I bi-amp and have been from my receiver. Added an Emotiva XPA 7 and had left and right line levels out to two channels in the XPA 7. I then had the speaker outputs for each of those channels going out to the speaker - so I guess essentially I had left and right going to the right speaker with the jumpers in place. I realize this is incorrect aside from the jumper issue - just confused in trying to do some different tests and this happened.
Like I said, music played for only a couple seconds and then the amp shut down. But not sure what would have been damaged here - amp, speakers, both, etc...
2) The pops came from the speakers when I plugged the interconnect into the amp from the receiver while the amp was on.
Okay, so the tweeter is still working so it's not blown. The amp is fine because the channels are working and the blue light is reflected for each channel - which would not be the case if something was wrong with it. BUT, I think the one speaker sounds a little different than the other so perhaps it's a crossover issue - or perhaps it's just in my head...
"It's possible that the crossover was damaged and that could account of a imbalance between the two speakers."
Can you elaborate on this a little so that I understand what I could potentially expect this to sound like?